Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015930707.1_cds_XP_016477720.1_69420
CDS Infomation

[gene=LOC107799148] [db_xref=GeneID:107799148] [protein=dicer-like protein 4 isoform X3] [protein_id=XP_016477720.1] [location=join(32497..32501,33364..33448,33533..33605,34853..34893,35342..35476,35560..35688,36401..36539,39564..39660,41920..42112,42259..42419,42503..42709,42869..43125,43216..43490,43561..43988,44849..44943,48672..48877,49140..49349,50699..51157,51275..51646)] [gbkey=CDS]
Sequence

ATGAGGATTGAATTTATTGCTCTTCTGATCTTTGATGAGTGCCACTATGCACAAGTTGAG
AGTGATCATCCTTATGCTGAGATTATGAAGATATTTTACAAACCTGATGTAGTAAAACTG
CCCCGTATACTTGGCATGACTGCATCTCCAATATCAGGAAAAGGTGCTACTGTTGAAGGC
CTTGAGACCTTACTTCGCTCTAAGGTGTATTCTGTTGAAGACAAGGATGAACTGGAACAG
TTTGTTGCATCACCTAAGGTGAATGTATACTACTATGGTCCTGGCGCCGCGTGTCTTACT
AAAGCTTACTCTCAGAAGCTTGAAGAGATAAAACACCAGTGTGTGATGGTGCTTCACAAG
AAAGCAGTTGATCATAGCACACTCAGGAACACAAAAAAGATGCTCAAGAGATTGCATGGA
CATCTAATTTTTTCTCTGGAAAACCTAGGTGTCTTTGGGGCATTACAGGCTAGTTGCATC
CTCTTAAAGGGGGATCACTATGAGCGCCATCAAATGGTGGAAGCTGATGTTAATGCTAGT
GATGACTCTTTGTGTGACAGATATCTGAGTCAGGTCGCCACAATGTTTACTTCTGGTTGT
GCTAAAGATGGTATGAATCCTGATTTGACACTTGTGGAAGTTCTGAAGGAGCCTTATTTC
TCCAAAAAGCTTTTACGTCTAATTGGAATCCTTTCCAACTTCGGGGTACAACCAGATATG
AAGTGCATAATTTTCGTCAATAGGATCGTGACTGCGAGATCTCTTTCTTATATGCTTCAG
CATCTGAAAGTTTTATCTTCTTGGAAATGCGGGTTTCTTGTAGGAGTGCACTCAGGATTG
AAGAGTATGTCACGAAAAAATACAAATATCATTCTCAATAAGTTCCGTTCTGGTGAGCTC
AACTTATTGGTTGCCACCAAAGTTGGCGAGGAAGGACTTGATATCCAGACATGCTGCCTT
GTTATACGATTTGATCTTCCTGAAACTGTTGCCAGTTTTATACAGTCTAGAGGGCGTGCC
CGCATGCCAAAGTCTGAATATGCATTTTTGGTTGATAGTGATAACCAAAGGGAGCTTAAT
TTGATTGAGCATTTTTCAAGAAATGAAGCTCGGATGAATGATGAGATTTCTTCCAAGAAA
TCTTGCACGACAGTTATAGATTTTCAAGAAAATATATACAAAGTAGATATGACTGGTGCA
ACCATCAGTTCTGCATCAAGCATTTCGTTGCTTCACCATTATTGTTCCAAGCTTCCACGT
GACGAGTTTTTCTGCCCCAAGCCGCAGTTCTTCTACTTTGATGACATAGATGGAACTATT
TGCAAATTAGTTTTGCCTTCAAACGCTCCAATGCATCAAATTGTGAGTGCTCCTCAATCT
TCTATAGAAGCAGCTAAGAAAGATGCCTGTTTAAGAGCCTGCAAGAGCTTGCATGAACTT
GGAGCACTCACTGATTATCTTTTGCCGGATCAAGCAGATGAAGACCTGATTCACGTTTTT
TCTGACTCAGAAAGCTCAGATGGCGAAGACGCACGAGAAGAGCTCCATGAGATGATTGTT
CCCGCTGCCTTTAAAGAACCATGGACTGAGACAGAGAGTCCTGTTTGCCTTAACTCGTAC
TACATCAACTTTTCACCTTGTCCAATTGATAGGGTTTATAAAAAGTTTGGCCTATTTTTG
AAAGCACCTCTTCCCCAAGAGGCTGAGAGAATGAAACTTAATCTCAACTTGGCTCGAGGT
AGATCTGTAGAGACAGAGCTTATTCCATCAGGAGCTACTAATTTTGAGAACAATGAGCAG
GTACAACTAGCAGAGAAGTTCCAGAGAATGTTCCTCAAGATCATTCTTGACCGCTCTGAG
TTCATTTCAGAATTCGTATCTTTGGAAAAACAAGATTATGTTGACTCAGCTTCAAAATCT
TACCTACTTCTTCCACTCAATTTATGTGGACACAATAAAATTTCCGTGGACTGGGAGCTT
GTCAGAAGATGCTTGTCATCACCAATTTTTGGGACTTCAGTATATGCAGGCAATAGTGAG
ATATCCAAATTTGATGAGCAGTTGCAACTTGCCAATGGTTCCAAAAGCGTACATGATGTT
GCCAATAGTTTGGTATATGTTCCATGCAAGGATACATTTTTCTTCATATCTGATGTTGTC
AAAGAAAGCAATGCATACAGCATATATAAAGATTCAAAAAACCATGTCAAACACTATTAT
GATACTTTTGGTATCCATCTTTCGTACCCTGAGCAACCACTAATAAAAGCAAAACAACTC
TTCTGTTTGGACAACTTGCTACGAAAGAAAGGCTATTCAGAGTTGCGTGATAAAGAGGAG
CACTTTGTTGAACTACCTGCTGAAATTTGCCAGCTCAAGATAATTGGGTTTTCCAAAGAT
ATTGGGAGCTCATTATCACTGTTGCCATCGATCATGCATCGTCTTGAAAGCCTACTTGTC
GCTATTGAACTAAAGGGCTGCCTATCTGCTTCTTTCCCTGAGGGAAGGGAAGTAACAATA
GATCATGTTCTTGAAGCACTTACTACAGAGAAATGCAATGAACCTTTTTCTCTTGAAAGG
CTTGAAGTGCTTGGTGATGCATTTCTCAAGTTTGCAGTTGGGAGGCATGTCTTTCTTACA
TACGATGCCTTTGACGAAGGACAGTTAACTAGAAGGCGCTCAAACATTGTGAACAATTCC
TATCTGTACACGATAGCAGTCAGAAACAATTTACAGGCATTTATTCGTGATCAATCATTT
GATCCCAACCACTTCTATGCAGTAGGCCGTCCGTGCCCTGTAATCTGTGACAAACAAACA
GAAAAAAACATACACGGTCAATGTGGTAGTGTAACAGATGGTGCAAAGACTGAAGTTAGG
TGTAGCAAATGTCATCAGTGGTTGCGTAAGAAAACAATTGCTGATATAGTTGAAGCCCTT
GTTGGCGCTTTTATAGTTGACAGTGGCTTCAAAGCAGCAATTGCATTTCTTAAATGGATT
GGTATCTATACAGATTTCGAAGAATCACAAGTAAAGAGTATTTGCGCTGCAAGCAAAGTC
TTTATGCCACTTGCTGATGAAATTGATATTCCGGCCATTGAAAATTTATTAGGTTATCCA
TTCGTCCATAAGGGTTTGCTCATTCAGGCCTTCATCCATCCATCTTATAACAACCACGGA
GGAGGTTGCTATCAGAGACTGGAGTTTCTTGGAGATGCTGTCCTCGATTATTTGATCACA
TCCTATCTATACTCTGTGTACCCAAAACTGAAGCCTGGCCAGTTGACTGATCTGAGATCA
GTTTCTGTAAACAACAACACCTTCGCAGTTGTTGCAGTACATCAAAGCTTCCACAGCCAT
ATACTCTGTGATTATAGTAGTGGCCTCCGTGAGTCAATTACTAGATATGTCAATTTCATT
GGAAGACCAGATTCTATGAAAAGGTTGGCTGAAGAGCCATCTTGTCCAAAGGTATTCACT
ATTTACATGATGAAATCTTCGATATTGATGGATTCATGGAGTTTCTTATACAGAGTTTAT
AATAGTTTGTGTTTACACTTATTGTAG

Peptide Sequence

PEP ID

XP_016477720.1
PEP Infomation

PREDICTED: dicer-like protein 4 isoform X3 [Nicotiana tabacum]
Sequence

MRIEFIALLIFDECHYAQVESDHPYAEIMKIFYKPDVVKLPRILGMTASPISGKGATVEG
LETLLRSKVYSVEDKDELEQFVASPKVNVYYYGPGAACLTKAYSQKLEEIKHQCVMVLHK
KAVDHSTLRNTKKMLKRLHGHLIFSLENLGVFGALQASCILLKGDHYERHQMVEADVNAS
DDSLCDRYLSQVATMFTSGCAKDGMNPDLTLVEVLKEPYFSKKLLRLIGILSNFGVQPDM
KCIIFVNRIVTARSLSYMLQHLKVLSSWKCGFLVGVHSGLKSMSRKNTNIILNKFRSGEL
NLLVATKVGEEGLDIQTCCLVIRFDLPETVASFIQSRGRARMPKSEYAFLVDSDNQRELN
LIEHFSRNEARMNDEISSKKSCTTVIDFQENIYKVDMTGATISSASSISLLHHYCSKLPR
DEFFCPKPQFFYFDDIDGTICKLVLPSNAPMHQIVSAPQSSIEAAKKDACLRACKSLHEL
GALTDYLLPDQADEDLIHVFSDSESSDGEDAREELHEMIVPAAFKEPWTETESPVCLNSY
YINFSPCPIDRVYKKFGLFLKAPLPQEAERMKLNLNLARGRSVETELIPSGATNFENNEQ
VQLAEKFQRMFLKIILDRSEFISEFVSLEKQDYVDSASKSYLLLPLNLCGHNKISVDWEL
VRRCLSSPIFGTSVYAGNSEISKFDEQLQLANGSKSVHDVANSLVYVPCKDTFFFISDVV
KESNAYSIYKDSKNHVKHYYDTFGIHLSYPEQPLIKAKQLFCLDNLLRKKGYSELRDKEE
HFVELPAEICQLKIIGFSKDIGSSLSLLPSIMHRLESLLVAIELKGCLSASFPEGREVTI
DHVLEALTTEKCNEPFSLERLEVLGDAFLKFAVGRHVFLTYDAFDEGQLTRRRSNIVNNS
YLYTIAVRNNLQAFIRDQSFDPNHFYAVGRPCPVICDKQTEKNIHGQCGSVTDGAKTEVR
CSKCHQWLRKKTIADIVEALVGAFIVDSGFKAAIAFLKWIGIYTDFEESQVKSICAASKV
FMPLADEIDIPAIENLLGYPFVHKGLLIQAFIHPSYNNHGGGCYQRLEFLGDAVLDYLIT
SYLYSVYPKLKPGQLTDLRSVSVNNNTFAVVAVHQSFHSHILCDYSSGLRESITRYVNFI
GRPDSMKRLAEEPSCPKVFTIYMMKSSILMDSWSFLYRVYNSLCLHLL

Transcript Sequence

Gene sequence data has not been registered.